Publications

Project 1

Project 2

Project 3

Project 4

Data Science Core

Decision Science Core

Community Engagement Core

Exposure Science Core

Research Translation Core

Administrative Core

Training Core

Risk Characterization and Probabilistic Concentration-Response Modeling of Complex Environmental Mixtures Using New Approach Methodologies (NAMs) Data from Organotypic in Vitro Human Stem Cell Assays

Read 2021. Hsieh NH, Chen Z, Rusyn I, Chiu WA 2021. Environ Health Perspect. 2021 Jan;129(1):17004. doi: 10.1289/EHP7600. Epub 2021 Jan 4.

Decreased bioavailability of aminomethylphosphonic acid (AMPA) in genetically modified corn with activated carbon or calcium montmorillonite clay inclusion in soil

Read 2021. Hearon SE, Wang M, McDonald TJ, Phillips TD 2021. J Environ Sci (China). 2021 Feb;100:131-143. doi: 10.1016/j.jes.2020.06.029. Epub 2020 Jul 27.

Analysis of reproducibility and robustness of a human microfluidic four-cell liver acinus microphysiology system (LAMPS)

Read 2021. Sakolish C, Reese CE, Luo YS, Valdiviezo A, Schurdak ME, Gough A, Taylor DL, Chiu WA, Vernetti LA, Rusyn I 2021. Toxicology. 2021 Jan 30;448:152651. doi: 10.1016/j.tox.2020.152651. Epub 2020 Dec 8.

From Pesticides to Per- and Polyfluoroalkyl Substances: An Evaluation of Recent Targeted and Untargeted Mass Spectrometry Methods for Xenobiotics

Read 2021. Dodds JN, Alexander NLM, Kirkwood KI, Foster MR, Hopkins ZR, Knappe DRU, Baker ES 2021. Anal Chem. 2021 Jan 12;93(1):641-656. doi: 10.1021/acs.analchem.0c04359. Epub 2020 Nov 2.

The COVID-19 Pandemic Vulnerability Index (PVI) Dashboard: Monitoring County-Level Vulnerability Using Visualization, Statistical Modeling, and Machine Learning

Read 2021. Marvel SW, House JS, Wheeler M, Song K, Zhou YH, Wright FA, Chiu WA, Rusyn I, Motsinger-Reif A, Reif DM 2021. Environ Health Perspect. 2021 Jan;129(1):17701. doi: 10.1289/EHP8690. Epub 2021 Jan 5.

Risk Characterization of Environmental Samples Using In Vitro Bioactivity and Polycyclic Aromatic Hydrocarbon Concentrations Data

Read 2021. Chen Z, Lloyd D, Zhou YH, Chiu WA, Wright FA, Rusyn I 2021. Toxicol Sci. 2021 Jan 6;179(1):108-120. doi: 10.1093/toxsci/kfaa166.

Polycyclic aromatic hydrocarbons (PAHs) cycling and fates in Galveston Bay, Texas, USA

Read 2020. Rowe GT, Fernando H, Elferink C, Ansari GAS, Sullivan J, Heathman T, Quigg A, Petronella Croisant S, Wade TL, Santschi PH 2020 PLoS One. 2020 Dec 28;15(12):e0243734. doi: 10.1371/journal.pone.0243734. eCollection 2020.

From Prevention to Disease Perturbations: A Multi-Omic Assessment of Exercise and Myocardial Infarctions

Read 2020. Odenkirk MT, Stratton KG, Bramer LM, Webb-Robertson BM, Bloodsworth KJ, Monroe ME, Burnum-Johnson KE, Baker ES 2020. Biomolecules. 2020 Dec 30;11(1):40. doi: 10.3390/biom11010040.

Polycyclic aromatic hydrocarbon status in post-hurricane Harvey sediments: Considerations for environmental sampling in the Galveston Bay/Houston Ship Channel region

Read 2020. Camargo K, Sericano JL, Bhandari S, Hoelscher C, McDonald TJ, Chiu WA, Wade TL, Dellapenna TM, Liu Y, Knap AH 2020. Mar Pollut Bull. 2021 Jan;162:111872. doi: 10.1016/j.marpolbul.2020.111872. Epub 2020 Nov 28

Single Cell Analysis Of Transcriptionally Active Alleles By Single Molecule FISH

Read 2020. Mistry RM, Singh PK, Mancini MG, Stossi F, Mancini MA 2020. J Vis Exp. 2020 Sep 20;(163). doi: 10.3791/61680

Rapid Characterization of Emerging Per- and Polyfluoroalkyl Substances in Aqueous Film-Forming Foams Using Ion Mobility Spectrometry-Mass Spectrometry

Read 2020. Luo YS, Aly NA, McCord J, Strynar MJ, Chiu WA, Dodds JN, Baker ES, Rusyn I 2020. Environ Sci Technol. 2020 Dec 1;54(23):15024-15034. doi: 10.1021/acs.est.0c04798. Epub 2020 Nov 11.

How tropical cyclone flooding caused erosion and dispersal of mercury-contaminated sediment in an urban estuary: The impact of Hurricane Harvey on Buffalo Bayou and the San Jacinto Estuary, Galveston Bay, USA

Read 2020. Dellapenna TM, Hoelscher C, Hill L, Al Mukaimi ME, Knap A 2020. Sci Total Environ. 2020 Dec 15;748:141226. doi: 10.1016/j.scitotenv.2020.141226. Epub 2020 Jul 31

Insights into the interactions of bisphenol and phthalate compounds with unamended and carnitine-amended montmorillonite clays

Read 2020. Orr AA, He S, Wang M, Goodall A, Hearon SE, Phillips TD, Tamamis P 2020. Comput Chem Eng. 2020 Dec 5;143:107063. doi: 10.1016/j.compchemeng.2020.107063. Epub 2020 Aug 21

Unveiling molecular signatures of preeclampsia and gestational diabetes mellitus with multi-omics and innovative cheminformatics visualization tools

Read 2020. Odenkirk MT, Stratton KG, Gritsenko MA, Bramer LM, Webb-Robertson BM, Bloodsworth KJ, Weitz KK, Lipton AK, Monroe ME, Ash JR, Fourches D, Taylor BD, Burnum-Johnson KE, Baker ES 2020. Mol Omics. 2020 Dec 1;16(6):521-532. doi: 10.1039/d0mo00074d. Epub 2020 Sep 23.

Structural-based connectivity and omic phenotype evaluations (SCOPE): a cheminformatics toolbox for investigating lipidomic changes in complex systems

Read 2020. Odenkirk MT, Zin PPK, Ash JR, Reif DM, Fourches D, Baker ES 2020. Analyst. 2020 Nov 9;145(22):7197-7209. doi: 10.1039/d0an01638a.

The COVID-19 Pandemic Vulnerability Index (PVI) Dashboard: monitoring county level vulnerability

Read 2020. Marvel S, House J, Wheeler M, Song K, Zhou Y, Wright F, Chiu W, Rusyn I, Motsinger-Reif A, Reif DM 2020. medRxiv. 2020 Aug 13;2020.08.10.20169649. doi: 10.1101/2020.08.10.20169649. Preprint

Well-tempered MCMC simulations for population pharmacokinetic models

Read 2020. Bois FY, Hsieh NH, Gao W, Chiu WA, Reisfeld B 2020. J Pharmacokinet Pharmacodyn. 2020 Dec;47(6):543-559. doi: 10.1007/s10928-020-09705-0. Epub 2020 Jul 31.

Recent Advances in Probabilistic Dose-Response Assessment to Inform Risk-Based Decision Making

Read 2020. Chiu WA, Paoli GM 2020. Risk Anal. 2020 Sep 23. doi: 10.1111/risa.13595. Online ahead of print.

Single-Cell Distribution Analysis of AR Levels by High-Throughput Microscopy in Cell Models: Application for Testing Endocrine-Disrupting Chemicals

Read 2020. Stossi F, Mistry RM, Singh PK, Johnson HL, Mancini MG, Szafran AT, Mancini MA 2020. SLAS Discov. 2020 Aug;25(7):684-694. doi: 10.1177/2472555220934420. Epub 2020 Jun 18.

A Mechanistic High-Content Analysis Assay Using a Chimeric Androgen Receptor That Rapidly Characterizes Androgenic Chemicals

Read 2020. Szafran AT, Bolt MJ, Obkirchner CE, Mancini MG, Helsen C, Claessens F, Stossi F, Mancini MA 2020. SLAS Discov. 2020 Aug;25(7):695-708. doi: 10.1177/2472555220922917. Epub 2020 May 11

Integrating Prediction and Performance Models into Scenario-based Resilient Community Design

Read 2020. Newman G, Kim Y, Joshi K, Liu J 2020. J Digit Landsc Archit. 2020;5:510-520.

Urban regeneration: Community engagement process for vacant land in declining cities

Read 2020. Kim G, Newman G, Jiang B 2020. Cities. 2020 Jul;102:102730. doi: 10.1016/j.cities.2020.102730. Epub 2020 Apr 27.

Tight sorption of arsenic, cadmium, mercury, and lead by edible activated carbon and acid-processed montmorillonite clay

Read 2020. Wang M, Bera G, Mitra K, Wade TL, Knap AH, Phillips TD 2020. Environ Sci Pollut Res Int. 2021 Feb;28(6):6758-6770. doi: 10.1007/s11356-020-10973-z. Epub 2020 Oct 2.

Metabolite collision cross section prediction without energy-minimized structures

Read 2020. Soper-Hopper MT, Vandegrift J, Baker ES, Fernández FM 2020. Analyst. 2020 Aug 21;145(16):5414-5418. doi: 10.1039/d0an00198h. Epub 2020 Jun 25.

Integrated Modeling of Transfer Learning and Intelligent Heuristic Optimization for Steam Cracking Process

Read 2020. Bi K, Beykal B, Avraamidou S, Pappas I, Pistikopoulos EN, Qiu T 2020. Ind Eng Chem Res. 2020 Sep 16;59(37):16357-16367. doi: 10.1021/acs.iecr.0c02657. Epub 2020 Aug 20.

Application of a unified probabilistic framework to the dose-response assessment of acrolein

Read 2020. Blessinger T, Davis A, Chiu WA, Stanek J, Woodall GM, Gift J, Thayer KA, Bussard D 2020. Environ Int. 2020 Oct;143:105953. doi: 10.1016/j.envint.2020.105953. Epub 2020 Aug 5.

Classification of estrogenic compounds by coupling high content analysis and machine learning algorithms

Read 2020. Mukherjee R, Beykal B, Szafran AT, Onel M, Stossi F, Mancini MG, Lloyd D, Wright FA, Zhou L, Mancini MA, Pistikopoulos EN 2020. PLoS Comput Biol. 2020 Sep 24;16(9):e1008191. doi: 10.1371/journal.pcbi.1008191. eCollection 2020 Sep.

Grouping of UVCB substances with new approach methodologies (NAMs) data

Read 2020. House JS, Grimm FA, Klaren WD, Dalzell A, Kuchi S, Zhang SD, Lenz K, Boogaard PJ, Ketelslegers HB, Gant TW, Wright FA, Rusyn I 2020. ALTEX. 2021;38(1):123-137. doi: 10.14573/altex.2006262. Epub 2020 Oct 9.

A Bayesian Method for Population-wide Cardiotoxicity Hazard and Risk Characterization Using an In Vitro Human Model

Read 2020. Blanchette AD, Burnett SD, Grimm FA, Rusyn I, Chiu WA 2020. Toxicol Sci. 2020 Dec 1;178(2):391-403. doi: 10.1093/toxsci/kfaa151

A data-driven optimization algorithm for differential algebraic equations with numerical infeasibilities

Read 2020. Beykal B, Onel M, Onel O, Pistikopoulos EN 2020. AIChE J. 2020 Oct;66(10):e16657. doi: 10.1002/aic.16657. Epub 2020 Jul 6.

Cardiovascular Effects of Polychlorinated Biphenyls and Their Major Metabolites

Read 2020. Grimm FA, Klaren WD, Li X, Lehmler HJ, Karmakar M, Robertson LW, Chiu WA, Rusyn I 2020. Environ Health Perspect. 2020 Jul;128(7):77008. doi: 10.1289/EHP7030. Epub 2020 Jul 23.

Coupling IR-MALDESI with Drift Tube Ion Mobility-Mass Spectrometry for High-Throughput Screening and Imaging Applications

Read 2020. Ekelöf M, Dodds J, Khodjaniyazova S, Garrard KP, Baker ES, Muddiman DC 2020. J Am Soc Mass Spectrom. 2020 Mar 4;31(3):642-650. doi: 10.1021/jasms.9b00081. Epub 2020 Feb 11.

Advancing Scenario Planning through Integrating Urban Growth Prediction with Future Flood Risk Models

Read 2020. Kim Y, Newman G 2020. Comput Environ Urban Syst. 2020. Jul;82:101498. doi: 10.1016/j.compenvurbsys.2020.101498. Epub 2020 Apr 24.

Integrated Data-Driven Process Monitoring and Explicit Fault-Tolerant Multiparametric Control

Read 2020. Onel M, Burnak B, Pistikopoulos EN 2020. Ind Eng Chem Res. 2020 Feb 12;59(6):2291-2306. doi: 10.1021/acs.iecr.9b04226. Epub 2019 Nov 21

PBPK modeling of impact of nonalcoholic fatty liver disease on toxicokinetics of perchloroethylene in mice

Read 2020. Dalaijamts C, Cichocki JA, Luo YS, Rusyn I, Chiu WA 2020. Toxicol Appl Pharmacol. 2020 Aug 1;400:115069. doi: 10.1016/j.taap.2020.115069. Epub 2020 May 21.

Questioning existing cancer hazard evaluation standards in the name of statistics

Read 2020. Rusyn I, Chiu WA, Wright FA 2020. Toxicol Sci. 2020 Oct 1;177(2):521-522. doi: 10.1093/toxsci/kfaa077

Rapid Characterization of Per- and Polyfluoroalkyl Substances (PFAS) by Ion Mobility Spectrometry-Mass Spectrometry (IMS-MS)

Read 2020. Dodds JN, Hopkins ZR, Knappe DRU, Baker ES 2020. Anal Chem. 2020 Mar 17;92(6):4427-4435. doi: 10.1021/acs.analchem.9b05364. Epub 2020 Feb 24.

Characterization of the variability in the extent of nonalcoholic fatty liver induced by a high-fat diet in the genetically diverse Collaborative Cross mouse model

Read 2020. de Conti A, Tryndyak V, Willett RA, Borowa-Mazgaj B, Watson A, Patton R, Khare S, Muskhelishvili L, Olson GR, Avigan MI, Cerniglia CE, Ross SA, Sanyal AJ, Beland FA, Rusyn I, Pogribny IP 2020. FASEB J. 2020 Jun;34(6):7773-7785. doi: 10.1096/fj.202000194R. Epub 2020 Apr 18.

Validating a comprehensive plan scoring system for healthy community design in League City, Texas

Read. 2020. Horney JA, Dwyer C, Vendrell-Velez B, Newman G 2020.

J Urban Des (Abingdon). 2020;25(2):203-217. doi: 10.1080/13574809.2019.1572453. Epub 2019 Feb 12.

pksensi: An R package to apply global sensitivity analysis in physiologically based kinetic modeling

Read 2020. Hsieh N-H., Reisfeld B, Chiu WA. SoftwareX.  Jul-Dec 2020;12:100609. doi: 10.1016/j.softx.2020.100609. Epub 2020 Oct 12.

Edible clay inclusion in the diet of oysters can reduce tissue residues of polychlorinated biphenyls

READ 2020. Wang M, Phillips T. Toxicol. Environ. Health Sci. https://doi.org/10.1007/s13530-020-00058-2

Temporal and spatial analysis of per and polyfluoroalkyl substances in surface waters of Houston ship channel following a large-scale industrial fire incident

READ 2020. Aly NA, Luo Y-S, Liu Y, Casillas G, McDonald MJ, Kaihatu JM, Jun M, Ellis N, Gossett S, Dodds JN, Baker ES, Bhandari S, Chiu WA, Rusyn I. Environmental Pollution 265(Part B):115009. PMID:  32574947. https://doi.org/10.1016/j.envpol.2020.115009.  

Rapid hazard characterization of environmental chemicals using a compendium of human cell lines from different organs

READ 2020. Chen Z, Liu Y, Wright FA, Chiu WA, Rusyn I. Altex. Alternatives to Animal Experimentation. epub June 8, 2020. PMID: 32521033. https://doi.org/10.14573/altex.2002291

DOMINO: Data-driven Optimization of bi-level Mixed-Integer Nonlinear Problems. Journal of Global Optimization

READ 2020. Beykal, B., Avraamidou, S., Pistikopoulos IPE, Pistikopoulos, E.N. Journal of Global Optimization. https://doi.org/10.1007/s10898-020-00890-3

The projected impact of a neighborhood-scaled green infrastructure retrofit

READ 2018.  Thiagarajan M, Newman G, Van Zandt S. Sustainability. 2018;10(10):3665. DOI:10.3390/su10103665 PMCID:PMC6247782

Vulnerable populations exposed to lead-contaminated drinking water within Houston Ship Channel communities

READ 2019. Sansom G, Cizmas L, Aarvig K, Dixon B, Kirsch KR, Katare A, Sansom L. Int J Environ Res Public Health. 2019;16(15):2745. DOI:10.3390/ijerph16152745 PMCID:PMC6695821

Climate change armor

READ 2019. Newman G, Qiao Z. Cheng shi she ji = Urban design. 2019;19(5):50-63. http://urbandesign.tsinghuajournals.com/EN/2096-1235/current.shtml PMCID:PMC6342505.

Oy Vey! A Comment on Machine Learning of Toxicological Big Data Enables Read-Across Structure Activity Relationships Outperforming Animal Test Reproducibility

READ 2019. Alves VM, Borba J, Capuzzi SJ, Muratov EN, Andrade CH, Rusyn I, Tropsha A. Toxicological Sciences: An Official Journal of the Society of Toxicology. 167:3-4. doi:10.1093/toxsci/kfy286 PMID:30500930 PMCID:PMC6317419

Thorough QT/QTc in a dish: An In Vitro human model that accurately predicts clinical concentration-QTc relationships

READ 2019. Blanchette A, Grimm FA, Dalaijamts C, Hsieh N, Ferguson K, Luo Y, Rusyn I, Chiu WA. Toxicology and Applied Pharmacology. 381:114711. doi:10.1016/j.taap.2019.114711 PMID:31425687 PMC6745256

Long-term combinatorial exposure to trichloroethylene and inorganic arsenic in genetically heterogeneous mice results in renal tubular damage and cancer-associated molecular changes

READ 2019. Perry A, Lynch RM, Rusyn I, Threadgill DW. G3 (Bethesda, Md.). 9(5):1729-1737. doi:10.1534/g3.119.400161 PMID:30898898 PMCID: PMC6505147.

Multi-dimensional in vitro bioactivity profiling for grouping of glycol ethers

READ 2019. Grimm FA, House JS, Wilson MR, Sirenko O, Iwata Y, Wright FA, Ball N, Rusyn I. Regulatory Toxicology and Pharmacology : RTP. 101:91-102. PMID:30471335. PMCID: PMC6333527.

Tributyltin (TBT) Induces RXRA Down-regulation and Lipid Accumulation in Human Liver Cells

READ 2019. Stossi F, Dandekar RD, Johnson H, Rivere P, Foulds CE, Mancini MG, Mancini MA. PLoS One. 2019 Nov 11;14(11): e0224405. doi: 1371/journal.pone.0224405. eCollection 2019. PubMed PMID: 31710612; PubMed Central PMCID: PMC6844554.

Estrogen-induced transcription at individual alleles is independent of receptor level and active conformation but can be modulated by coactivators activity

READ 2020. Stossi F, Dandekar RD, Mancini MG, Gu G, Fuqua SAW, Nardone A, De Angelis C, Fu X, Schiff R, Bedford MT, Xu W, Johansson HE, Stephan CC, and Mancini MA. Nucleic Acids Research, Volume 48, Issue 4, 28 February 2020, Pages 1800–1810. PubMed PMID: 31930333; PubMed Central PMCID: PMC7039002.  https://doi.org/10.1093/nar/gkz1172

Leveraging Image-Derived Phenotypic Measurements for Drug-Target Interaction Predictions

READ 2019. Kuthuru S, Szafran AT, Stossi F, Mancini MA, Rao A. Cancer Inform. 2019 Jun 12;18: 1176935119856595. PMID: 31217689. PMCID: PMC6563400.  doi: 10.1177/1176935119856595.

Bacteria-to-human protein networks reveal origins of endogenous DNA damage

READ 2019. Xia J, Chiu L, Nehring R, Bravo Nunez M, Mei Q, Perez M, Zhai Y, Fitzgerald D, Pribis J, Wang Y, Hu C, Powell R, LaBonte S, Jalali A, Matadamas Guzman M, Lentzsch A, Szafran AT, Joshi M, Richters M, Gibson J, Frisch R, Hastings P, Bates D, Queitsch C, Hilsenbeck SG, Coarfa C, Hu JC, Siegele DA, Scott KL, Liang H, Mancini MA, Herman C, Miller KM, Rosenberg SM. Cell. 2019 Jan 10;176(1-2):127-143.e24. doi: 10.1016/j.cell.2018.12.008.

Measuring mobility in chromatin by intensity sorted FCS

READ 2019. Di Bona M, Mancini MA, Mazza D, Vicidomini G, Diaspro A, Lazano L.  The Biophysical Journal 116(6):P987-999. doi:10.1016/j.bpj.2019.02.003. PMID:30819566. PMCID:PMC6428914.

Development of broad-acting clays for the tight adsorption of benzo[a]pyrene and aldicarb

READ 2019. Wang M, Hearon SE, Johnson NM, Phillips TD. Applied Clay Science, 168:196-202. https://doi.org/10.1016/j.clay.2018.11.010.

Tropical cyclone heat potential and the rapid intensification of Hurricane Harvey in the Texas Bight

READ 2019.  Potter H, DiMarco SF, Knap A. Journal of Geophysical Research:Oceans, 124. https://doi.org/10.1029/2018JC014776.

Predictive statistical representations of observed and simulated rainfall using generalized linear models

READ 2019. Yang J, Jun M, Schumacher C, Saravanan R. Journal of Climate. 32:3409-3427. doi:10.1175/jcli-d-18-0527.1

Spatio-temporal short-term wind forecast: a calibrated regime-switching method

READ 2019.  Ezzat AA, Jun M, Ding Y. 2019. Annals of Applied Statistics.  13(3):1484-1510 · September 2019 . DOI: 10.1214/19-AOAS1243.

Integrating a Resilience Scorecard and Landscape Performance into a Geodesign Process

READ 2020. Newman G, Malecha M, Yu S, Qiao Z, Horney J, Lee J, Kim YJ, Lee RJ, Berke P. Landsc Res. 2020;45(1):63-80. Epub 2019 Feb 7. PMID: 31983788 PMCID: PMC6980241.  doi: 10.1080/01426397.2019.1569219

In Vitro Bioavailability of the Hydrocarbon Fractions of Dimethyl Sulfoxide Extracts of Petroleum Substances

READ 2020. Luo YS, Ferguson KC, Rusyn I, Chiu WA. Toxicol Sci. 2020 Apr 1;174(2):168-177. PMID: 32040194. PMCID: PMC7098373 [Available on 2021-04-01] DOI: 10.1093/toxsci/kfaa007.

HGBEnviroScreen: Enabling Community Action through Data Integration in the Houston-Galveston-Brazoria Region

READ 2020. Bhandari S, Lewis PGT, Craft E, Marvel SW, Reif DM, Chiu WA. Int J Environ Res Public Health. 2020 Feb 11;17(4). pii: E1130.  PMID: 2053902. PMCID: PMC7068489. doi: 10.3390/ijerph17041130. https://vetmed.tamu.edu/news/press-releases/texas-am-researchers-develop-new-tool-to-help-communities-access-environmental-risk-data/

Elimination of antibiotic resistance genes and control of horizontal transfer risk by UV-based treatment of drinking water: A mini review

READ 2019.  Sharma VK, Yu X, McDonald TJ, Jinadatha C, Dionysiou DD, Feng M. Front Environ Sci Eng. 2019 Jun;13(3). doi: 10.1007/s11783-019-1122-7. Epub 2019 Jun 8. PMID: 32133212.

Low-Dose Silver Nanoparticle Surface Chemistry and Temporal Effects on Gene Expression in Human Liver Cells

READ 2020.  House JS, Bouzos E, Fahy KM, Francisco VM, Lloyd DT, Wright FA, Motsinger-Reif AA, Asuri P, Wheeler KE. Small. 2020 Mar 29:e2000299. doi: 10.1002/smll.202000299. [Epub ahead of print]. PMID: 32227433. DOI: 10.1002/smll.202000299

Using the 12-item short form health survey (SF-12) to assess self rated health of an engaged population impacted by hurricane Harvey, Houston, TX

READ 2020.  Sansom GT, Kirsch K, Horney JA. BMC Public Health. 2020 Feb 9;20(1):257. PMID: 32075614 PMCID: PMC7031970. doi: 10.1186/s12889-020-8349-x

Validating a comprehensive plan scoring system for healthy community design in League City, Texas

READ 2019. Horney JA, Dwyer C, Vendrell-Velez B, Newman G. Journal of urban design. 25(2):203-217 2020. Published online: 12 Feb 2019.  https://doi.org/10.1080/13574809.2019.1572453.

Potential Applications of Clay-Based Therapy for the Reduction of Pesticide Exposures in Humans and Animals

READ 2019. Wang M, Phillips TD. Applied sciences. 2019, 9(24), 5325; https://doi.org/10.3390/app9245325 (Basel, Switzerland).

Using Spatial Analysis to Examine Potential Sources of Polycyclic Aromatic Hydrocarbons in an Environmental Justice Community After Hurricane Harvey

READ 2019. Stone KW, Casillas GA, Karaye I, Camargo K, McDonald TJ, Horney JA. Environmental justice 12(4).194-203. (Print). PubMed Central PMCID: PMC6707063. https://doi.org/10.1089/env.2019.0007

Sustainable Cities and Healthy Cities: Are They the Same?

READ 2017. Portney KE, Sansom GT. Urban planning.  2017, 2(3)45–55 DOI: 10.17645/up.v2i3.1018

A nonlinear support vector machinebased feature selection approach for fault detection and diagnosis: Application to the Tennessee Eastman process

READ 2019. Onel M, Kieslich CA, Pistikopoulos EN.  AIChE 65(3)992-1005 March 2019. https://doi.org/10.1002/aic.16497

A Structural Examination and Collision Cross Section Database for Over 500 Metabolites and Xenobiotics Using Drift Tube Ion Mobility Spectrometry

READ 2017. Zheng X, Aly NA, Zhou, U, Dupuis KT, Bilbao A, Paurus VL, Orton DJ, Wilson R, Payne SH, Smith RD, Baker ES. Chemical science. 2017,8, 7724-7736. https://doi.org/10.1039/C7SC03464D.

NovaSil Clay for the Protection of Humans and Animals from Aflatoxins and Other Contaminants

READ 2019. Phillips TD, Wang M, Elmore SE, Hearon S, Wang J-S. Clays and Clay Minerals 67:99–110 (2019), DOI:10.1007/s42860-019-0008-xCorpus ID: 133135316.  

Citizen Science-Informed Community Master Planning: Land Use and Built Environment Changes to Increase Flood Resilience and Decrease Contaminant Exposure

READ 2020. Newman G, Shi T, Yao Z, Li D, Sansom G, Kirsch K, Casillas G, Horney J. International journal of environmental research and public health. 2020 January 12;17(2). PubMed PMID: 31940904; DOI: 10.3390/ijerph17020486.

Accumulation and phytotoxicity of perfluorooctanoic acid and 2,3,3,3-tetrafluoro-2- (heptafluoropropoxy)propanoate in Arabidopsis thaliana and Nicotiana benthamiana

READ 2019. Chen CH, Yang SH, Liu Y, Jamieson P, Shan L, Chu KH.  Environmental pollution (Barking, Essex : 1987). 2019 December 28;259:113817. PubMed PMID: 31918129; DOI: 10.1016/j.envpol.2019.113817.

Predicting tubular reabsorption with a human kidney proximal tubule tissue- on-a-chip and physiologically-based modeling

READ 2020. Sakolish C, Chen Z, Dalaijamts C, Mitra K, Liu Y, Fulton T, Wade TL, Kelly EJ, Rusyn I, Chiu WA. Toxicology in vitro : an international journal published in association with BIBRA. Epub2019 December 16:104752. Toxicol In Vitro. 2020 Mar;63:104752. PubMed PMID: 31857146; PMCID: PMC7053805 DOI: 10.1016/j.tiv.2019.104752.

A high capacity bentonite clay for the sorption of aflatoxins

READ 2020. Wang M, Hearon SE, Phillips TD. Food additives & contaminants. Part A, Chemistry, analysis, control, exposure & risk assessment. 2019 December 2:1-10. PubMed PMID: 31790632; DOI: 10.1080/19440049.2019.1662493.

Strong adsorption of Polychlorinated Biphenyls by processed montmorillonite clays: Potential applications as toxin enterosorbents during disasters and floods

READ 2019. Wang M, Safe S, Hearon SE, Phillips TD. Environmental pollution (Barking, Essex : 1987). 2019 December;255(Pt 1):113210. PubMed PMID: 31542671; PubMed Central PMCID: PMC6878994; DOI: 10.1016/j.envpol.2019.113210.

Benefits from Fish Consumption vs. Risks from Inhalation Exposures Associated with Contaminated Sediment Remediation: Dredging of the Hudson River

READ 2019. Kvasnicka J, Stylianou KS, Nguyen VK, Huang L, Chiu WA, Burton GA Jr, Semrau J, Jolliet O. Environmental health perspectives. 2019 December;127(12):127004. PubMed PMID: 31834828; PubMed Central PMCID: PMC6957280; DOI: 10.1289/EHP5034.

Strong Adsorption of Dieldrin by Parent and Processed Montmorillonite Clays

READ 2020. Hearon SE, Wang M, Phillips TD.  Environ Toxicol Chem. 2020 Mar;39(3):517-525. doi: 10.1002/etc.4642. Epub 2020 Jan 22. PubMed PMID: 31756776; PMCID: PMC7047628.  DOI: 10.1002/etc.4642.

An integrative method for identification and prioritization of constituents of concern in produced water from onshore oil and gas extraction

READ 2019. Danforth C, Chiu WA, Rusyn I, Schultz K, Bolden A, Kwiatkowski C, Craft E. Environment international. 2019 November 5;134:105280. PubMed PMID: 31704566; DOI: 10.1016/j.envint.2019.105280.

Diverse tumour susceptibility in Collaborative Cross mice: identification of a new mouse model for human gastric tumourigenesis

READ 2019. Wang P, Wang Y, Langley SA, Zhou YX, Jen KY, Sun Q, Brislawn C, Rojas CM, Wahl KL, Wang T, Fan X, Jansson JK, Celniker SE, Zou X, Threadgill DW, Snijders AM, Mao JH. Gut. 2019 November;68(11):1942-1952. PubMed PMID: 30842212; PubMed Central PMCID: PMC6839736; DOI:10.1136/gutjnl-2018-316691.

Ion Mobility Spectrometry: Fundamental Concepts, Instrumentation, Applications, and the Road Ahead

READ 2019. Dodds JN, Baker ES. Journal of the American Society for Mass Spectrometry. 2019 November;30(11):2185-2195. PubMed PMID: 31493234; PubMed Central PMCID: PMC6832852; DOI: 10.1007/s13361-019-02288-2.

Baseline data for distribution of contaminants by natural disasters: results from a residential Houston neighborhood during Hurricane Harvey flooding

READ 2019. Bera G, Camargo K, Sericano JL, Liu Y, Sweet ST, Horney J, Jun M, Chiu W, Rusyn I, Wade TL, Knap AH. Heliyon. 2019 November;5(11):e02860. PubMed PMID: 31763489; PubMed Central PMCID: PMC6861583; DOI: 10.1016/j.heliyon.2019.e02860.

Montmorillonites Can Tightly Bind Glyphosate and Paraquat Reducing Toxin Exposures and Toxicity

READ 2019. Wang M, Orr AA, He S, Dalaijamts C, Chiu WA, Tamamis P, Phillips TD. ACS omega. 2019 October 29;4(18):17702-17713. PubMed PMID: 31681876; PubMed Central PMCID: PMC6822125; DOI: 10.1021/acsomega.9b02051.

Population-based toxicity screening in human induced pluripotent stem cell-derived cardiomyocytes

READ 2019. Burnett SD, Blanchette AD, Grimm FA, House JS, Reif DM, Wright FA, Chiu WA, Rusyn I. Toxicology and applied pharmacology. 2019 October 15;381:114711. PubMed PMID: 31425687; PubMed Central PMCID: PMC6745256; DOI: 10.1016/j.taap.2019.114711.

Subtypes of Park Use and Self-Reported Psychological Benefits Among Older Adults: A Multilevel Latent Class Analysis Approach

READ 2019. Li D, Zhai Y, Xiao Y, Newman G, Wang. Landscape and urban planning. 2019 October;190. PubMed PMID: 31341342; PubMed Central PMCID: PMC6656528; DOI: 10.1016/j.landurbplan.2019.103605.

A Spatial Analysis of Possible Environmental Exposures in Recreational Areas Impacted by Hurricane Harvey Flooding, Harris County, Texas

READ 2019. Karaye I, Stone KW, Casillas GA, Newman G, Horney JA. Environmental management. 2019 October;64(4):381-390. PubMed PMID: 31515572; PubMed Central PMCID: PMC6790291; DOI: 10.1007/s00267-019-01204-4.

Comparative analysis of Rapid Equilibrium Dialysis (RED) and solid phase micro-extraction (SPME) methods for In Vitro-In Vivo extrapolation of environmental chemicals

READ 2019. Ferguson KC, Luo YS, Rusyn I, Chiu WA. Toxicology in vitro : an international journal published in association with BIBRA. 2019 October;60:245-251. PubMed PMID: 31195086; PubMed Central PMCID: PMC6717004; DOI: 10.1016/j.tiv.2019.06.006.

Evaluating drivers of housing vacancy: a longitudinal analysis of large U.S. cities from 1960 to 2010

READ 2019. Newman G, Lee RJ, Gu D, Park Y, Saginor J, Van Zandt S, Li W. Journal of housing and the built environment: HBE. 2019 September;34(3):807-827. PubMed PMID: 31857804; PubMed Central PMCID: PMC6920573; DOI: 10.1007/s10901-019- 09684-w.

Improving Hurricane Harvey Disaster Research Response Through Academic-Practice Partnerships

READ 2019. Horney JA, Rios J, Cantu A, Ramsey S, Montemayor L, Raun L, Miller A. American journal of public health. 2019 September;109(9):1198-1201. PubMed PMID: 31318601; PubMed Central PMCID: PMC6687265; DOI: 10.2105/AJPH.2019.305166.

Evaluating the structural complexity of isomeric bile acids with ion mobility spectrometry

READ 2019. Zheng X, Smith FB, Aly NA, Cai J, Smith RD, Patterson AD, Baker ES. Analytical and bioanalytical chemistry. 2019 July;411(19):4673-4682. PubMed PMID: 31098744; PubMed Central PMCID: PMC6612315; DOI: 10.1007/s00216-019-01869-0.

Ion Mobility Spectrometry and the Omics: Distinguishing Isomers, Molecular Classes and Contaminant Ions in Complex Samples

READ 2019. Burnum-Johnson KE, Zheng X, Dodds JN, Ash J, Fourches D, Nicora CD, Wendler JP, Metz TO, Waters KM, Jansson JK, Smith RD, Baker ES. Trends in analytical chemistry : TRAC. 2019 July;116:292-299. PubMed PMID: 31798197; PubMed Central PMCID: PMC6887105; DOI: 10.1016/j.trac.2019.04.022.

Challenges in Identifying the Dark Molecules of Life

READ 2019. Monge ME, Dodds JN, Baker ES, Edison AS, Fernández FM. Annual review of analytical chemistry (Palo Alto, Calif.). 2019 June 12;12(1):177-199. PubMed PMID: 30883183; PubMed Central PMCID:PMC6716371; DOI: 10.1146/annurev-anchem-061318-114959.

Evaluating the Impact of Race and Gender on Environmental Risk Perceptions in the Houston Neighborhood of Manchester

READ 2019. Sansom G, Berke P, McDonald T, Shipp E, Horney JA. Environmental justice (Print). 2019 June;12(3):92-98. PubMed PMID: 31871531; PubMed Central PMCID: PMC6927678; DOI: 10.1089/env.2018.0028.

Using Collaborative Cross Mouse Population to Fill Data Gaps in Risk Assessment: A Case Study of Population-Based Analysis of Toxicokinetics and Kidney Toxicodynamics of Tetrachloroethylene

READ 2019. Luo YS, Cichocki JA, Hsieh NH, Lewis L, Wright FA, Threadgill DW, Chiu WA, Rusyn I. Environmental health perspectives. 2019 June;127(6):67011. PubMed PMID: 31246107; PubMed Central PMCID: PMC6792382; DOI: 10.1289/EHP5105.

Global multivariate point pattern models for rain type occurrence

READ 2019. Jun M, Schumacher C, Saravanan R. Spatial statistics. 2019 June;31. PubMed PMID: 31886123; PubMed Central PMCID: PMC6934176; DOI: 10.1016/j.spasta.2019.04.003.

Differential toxicity of water versus gavage exposure to trichloroethylene in rats

READ 2019. Stermer AR, Klein D, Wilson SK, Dalaijamts C, Bai CY, Hall SJ, Madnick S, Bianchi E, Chiu WA, Boekelheide K. Environmental toxicology and pharmacology. 2019 May;68:1-3. PubMed PMID: 30836291; PubMed Central PMCID: PMC6594756; DOI: 10.1016/j.etap.2019.02.003.

Predicting Ion Mobility Collision Cross-Sections Using a Deep Neural Network: DeepCCS.

READ 2019. Plante PL, Francovic-Fontaine É, May JC, McLean JA, Baker ES, Laviolette F, Marchand M, Corbeil J. Analytical chemistry. 2019 April 16;91(8):5191-5199. PubMed PMID: 30932474; PubMed Central PMCID: PMC6628689; DOI: 10.1021/acs.analchem.8b05821.

Neighborhood decline and mixed land uses: mitigating housing abandonment in shrinking cities

READ 2019. Gu D, Newman G, Kim JH, Park Y, Lee J. Land use policy. 2019 April;83:505- 511. PubMed PMID: 31662594; PubMed Central PMCID: PMC6818744; DOI: 10.1016/j.landusepol.2019.02.033.

The Living Green Infrastructure Lab: Advancing Interdisciplinary Teaching and Experiential Learning in Landscape Architecture Pedagogy

READ 2019. Tao Z, Newman G, Arnold M, Li MH, Kim JH. Landscape research record. 2019 March;8:75-86. PubMed PMID: 31891111; PubMed Central PMCID: PMC6936730.

Phototransformation of halophenolic disinfection byproducts in receiving seawater: Kinetics, products, and toxicity

READ 2019. Liu J, Zhang X, Li Y, Li W, Hang C, Sharma VK. Water research. 2019 March 1;150:68-76. PubMed PMID: 30508715; PubMed Central PMCID: PMC6390291; DOI: 10.1016/j.watres.2018.11.059.

Climate Change Preparedness: Comparing Future Urban Growth and Flood Risk in Amsterdam and Houston

READ 2019. Kim Y, Newman G. Sustainability. 2019 February 18;11(4). PubMed PMID: 30809384; PubMed Central PMCID: PMC6387741; DOI: 10.3390/su11041048.

A general dose-response relationship for chronic chemical and other health stressors and mixtures based on an emergent illness severity model

READ 2019. Englehardt JD, Chiu WA. PloS one. 2019 February 15;14(2):e0211780. PubMed PMID: 30768598; PubMed Central PMCID: PMC6377108; DOI: 10.1371/journal.pone.0211780.

Development of enterosorbents that can be added to food and water to reduce toxin exposures during disasters

READ 2019. Wang M, Hearon SE, Phillips TD. Journal of environmental science and health. Part. B, Pesticides, food contaminants, and agricultural wastes. 2019;54(6):514-524. PubMed PMID: 31014207; PubMed Central PMCID: PMC6681816; DOI: 10.1080/03601234.2019.1604039.

Feasibility of Portable Fingerstick Cholinesterase Testing in Adolescents in South Texas

READ 2019. Trueblood AB, Ross JA, Shipp EM, McDonald TJ. Journal of primary care & community health. 2019 January;10:2150132719838716. PubMed PMID: 30929548; PubMed Central PMCID: PMC6444767; DOI: 10.1177/2150132719838716.

Grouping of complex substances using analytical chemistry data: A framework for quantitative evaluation and visualization

READ 2019. Onel M, Beykal B, Ferguson K, Chiu WA, McDonald TJ, Zhou L, House JS, Wright FA, Sheen DA, Rusyn I, Pistikopoulos EN. PLOS one 14(10): e0223517. Published: October 10, 2019. ttps://doi.org/10.1371/journal.pone.0223517

Resilience through Regeneration: The economics of repurposing vacant land with green infrastructure

READ 2019. Newman G, Dongying L, Rui Z, Dingding R.Landscape architecture frontiers. 2019 January;6(6):10-23. PubMed PMID: 30761217; PubMed Central PMCID: PMC6370328; DOI: 10.15302/J-LAF-20180602.

Development of the Texas A&M Superfund Research Program Computational Platform for Data Integration, Visualization, and Analysis

READ 2019. Mukherjee R, Onel M, Beykal B, Szafran AT, Stossi F, Mancini MA, Zhou L, Wright FA, Pistikopoulos EN. ESCAPE. European Symposium on Computer Aided Process Engineering. 2019;46:967-972.PubMed PMID: 31612156; PubMed Central PMCID: PMC6791821; DOI: 10.1016/B978- 0-12-818634-3.50162-4.

Engaged Environmental Science for Underserved Youth

READ 2019. Kirsch KR, Elizondo J, Hoyos Salazar D, Washington S, Burdick T, Alvarez P, Horney JA. Environmental education research. 2019;25(9):1416-1425. PubMed PMID: 31814794; PubMed Central PMCID: PMC6897383; DOI: 0.1080/13504622.2019.1637822.

Permissiveness to form pluripotent stem cells may be an evolutionarily derived characteristic in Mus musculus

READ 2018. Garbutt TA, Konneker TI, Konganti K, Hillhouse AE, Swift-Haire F, Jones A, Phelps D, Aylor DL, Threadgill DW. Scientific reports. 2018 October 2;8(1):14706. PubMed PMID: 30279419; PubMed Central PMCID: PMC6168588; DOI: 10.1038/s41598-018-32116-8.

Metabolism and Toxicity of Trichloroethylene and Tetrachloroethylene in Cytochrome P450 2E1 Knockout and Humanized Transgenic Mice

READ 2018. Luo YS, Furuya S, Soldatov VY, Kosyk O, Yoo HS, Fukushima H, Lewis L, Iwata Y, Rusyn I. Toxicological sciences : an official journal of the Society of Toxicology. 2018 August 1;164(2):489-500. PubMed PMID: 29897530; PubMed Central PMCID: PMC6061689; DOI:10.1093/toxsci/kfy099.

Characterization of inter-tissue and inter-strain variability of TCE glutathione conjugation metabolites DCVG, DCVC, and NAcDCVC in the mouse

READ 2018. Luo YS, Furuya S, Chiu W, Rusyn I 2018. Journal of Toxicology and Environmental Health. Part A. 2018;81(1-3):37-52. PubMed PMID: 29190187; PubMed Central PMCID: PMC6088749; DOI:10.1080/15287394.2017.1408512.

Transciptional landscape of mouse-aged ovaries reveals a unique set of non-coding RNAs associated with physiological and environmental ovarian dysfunctions.

READ 2018. Cuomo D, Porreca I, Ceccarelli M, Threadgill DW, Barrington WT, Petriella A, D'Angelo F, Cobellis G, De Stefano F, D'Agostino MN, De Felice M, Mallardo M, Ambrosino C. 2018. Cell death discovery. 2018:4:112. PubMed PMID: 30534420; PubMed Central PMCID: PMC6281605; DOI: 10.1038/s41420-018-0121-y

Chemistry-Wide Association Studies (CWAS): A Novel Framework for Identifying and Interpreting Structure-Activity Relationships

READ  November 2018. Low YS, Alves VM, Fourches D, Sedykh A, Andrade CH, Muratov EN, Rusyn I, Tropsha A. 2018 J Chem Inf Model. doi: 10.1021/acs.jcim.8b00450. PMID: 30376324

Thorough QT/QT c in a Dish: An In Vitro Human Model That Accurately Predicts Clinical Concentration‐QT c Relationships

Read  2018. Blanchette AD, Grimm FA, Dalaijamts C, Hsieh NH, Ferguson K, Luo YS, Rusyn I, Chiu WA. 2018Clinical Pharmacology & Therapeutics. dOI: 10.1002/cpt.1259. PMID: 30346629

Software Tools to Facilitate Systematic Review Used for Cancer Hazard Identification

READ 2018. Shapiro AJ, Antoni S, Guyton KZ, Lunn RM, Loomis D, Rusyn I, Jahnke GD, Schwingl PJ, Mehta SS, Addington J, and Guha N. 2018. Environmental Health Perspectives. 126(10):104501. doi: 10.1289/EHP4224. PMID: 30392397

Domestic Exposures to Polycyclic Aromatic Hydrocarbons in Houston, Texas, Environmental Justice Neighborhood

READ 2018. Sansom GT, Kirsch KR, Stone KW, McDonald TJ, and Horney J A. 2018. Environmental Justice. doi: 10.1089/env.2018.

Participatory action research: tools for disaster resilience education

READ 2018. Meyer M, Hendricks M, Newman G, Masterson J, Cooper J, Sansom G, Gharaibeh N, Horney J, Berke P, van Zandt S, Cousins T. 2018. International Journal of Disaster Resilience in the Built Environment, 9(4): 402-419. https://doi.org/10.1108/IJDRBE-02-2017-0015

Interdisciplinary Citizen Science and Design Projects for Hazard and Disaster Education

READ 2019. Masterson J, Meyer M, Ghariabeh N, Hendricks M, Lee R, Musharrat S, Newman G, … Van Zandt S. 2019. International Journal of Mass Emergencies and Disasters.  2019 Mar; 37(1): 6–24. PMID: 31244503. PMCID: PMC6594559

High-Content Assay Multiplexing for Muscle Toxicity Screening in Human-Induced Pluripotent Stem Cell-Derived Skeletal Myoblasts

READ 2018. Klaren WD, Rusyn I. 2018. Assay Drug Dev Technol, 16(6):333-342. doi: 10.1089/adt.2018.860. PMID: 30070899. PMCID: PMC6114077

Effectiveness of Zinc-oxide-assisted Photocatalysis for Concerned Constituents in Reclaimed Wastewater: 1, 4-Dioxane, Trihalomethanes, Antibiotics, Antibiotic Resistant Bacteria (ARB), and Antibiotic Resistance Genes (ARGs)

READ 2018. Hwangbo M, Claycomb EC, Liu Y, Alivio TE, Banerjee S, & Chu KH. 2018. Science of The Total Environment, 649, 1189-1197. https://doi.org/10.1016/j.scitotenv.2018.08.360. PMID: 30308890

Simultaneous Fault Detection and Identification in Continuous Processes via Nonlinear Support Vector Machine Based Feature Selection

READ 2018. Onel M, Kieslich CA, Guzman YA, and Pistikopoulos EN. 2018. In Computer Aided Chemical Engineering (Vol. 44, pp. 2077-2082). Elsevier.

A Hierarchical Food-Energy-Water Nexus (FEW-N) Decision-making Approach for Land Use Optimization

READ 2018. Avraamidou S, Beykal B, Pistikopoulos IP, and Pistikopoulos EN. 2018. In Computer Aided Chemical Engineering (Vol. 44, pp. 1885-1890). Elsevier.

Using Skyline to Analyze Data Containing Liquid Chromatography, Ion Mobility Spectrometry and Mass Spectrometry Dimensions

READ 2018. MacLean, BX, Pratt, B, Egertson, JD, MacCoss, MJ, Smith, RD, Baker, ES. 2018. Journal of the American Society of Mass Spectrometry. doi: 10.1007/s13361-018-2028-5. PMID: 30047074. PMCID: PMC6191345

Comparative Analysis of Metabolism of Trichloroethylene and Tetrachloroethylene among Mouse Tissues and Strains

READ 2018. Luo YS, Hsieh NH, Soldatow VY, Chiu WA and Rusyn I. 2018.Toxicology. doi: 10.1016/j.tox.2018.07.012. PMID: 30053492. PMCID: PMC6186498

A Human Population-based Organotypic in Vitro Model for Cardiotoxicity Screening 

READ 2018. Grimm F, Blanchette A, House JS, Ferguson K, Hsieh NH, Dalaijamts C, Wright AA, Anson B, Wright FA, Chiu WA and Rusyn I. 2018. ALTEX-Alternatives to Animal Experimentation. doi: 10.14573/altex.1805301. PMID: 29999168

Towards a Quantitative Food-Energy-Water Nexus Metric to Facilitate Decision Making in Process Systems: A Case Study on a Dairy Production Plant

READ 2018. Avraamidou S, Milhorn A, Sarwar O, & Pistikopoulos EN. 2018. In Computer Aided Chemical Engineering (Vol. 43, pp. 391-396). Elsevier. doi: 10.1016/B978-0-444-64235-6.50071-1. PMID: 30320306. PMCID: PMC6177266

Optimal Chemical Grouping and Sorbent Material Design by Data Analysis, Modeling and Dimensionality Reduction Techniques

READ 2018. Onel, M, Beykal B, Wang M, Grimm FA, Zhou L, Wright FA, Phillips T, Rusyn I, and Pistikopoulos EN. 2018In Computer Aided Chemical Engineering (Vol. 43, pp. 421-426). Elsevier        

Re: ‘Application of the Key Characteristics of Carcinogens in Cancer Hazard Evaluation’: Response to Goodman, Lynch and Rhomberg.

READ 2018. Guyton KZ, Rusyn I, Chiu WA, Corpet DE, Van den Berg M, Ross MK, Christiani DC, Beland FA, Smith MT. 2018. Carcinogenesis, doi: 10.1093/carcin/bgy082. [Epub ahead of print] PMID: 29982359

Beyond the RfD: Broad Application of a Probabilistic Approach to Improve Chemical Dose-response Assessment for Non-cancer Effects

READ 2018. Chiu WA, Axelrad DA, Dalaijamts C, Dockins C, Shao K, Shapiro AJ, Paoli G. 2018. Environmental health perspectives, 126(6), 067009-067009. DOI: 10.1289/EHP3368. PMID: 29968566. PMCID: PMC6084844    

Applying a Global Sensitivity Analysis Workflow to Improve the Computational Efficiencies in Physiologically-Based Pharmacokinetic Modeling

READ 2018. Hsieh NH, Reisfeld B, Bois FY, and Chiu WA. 2018. Frontiers in Pharmacology, 9. doi: 10.3389/fphar.2018.00588. PMID: 29937730. PMCID: PMC6002508

gQTL: A Web Application for QTL Analysis Using the Collaborative Cross Mouse Genetic Reference Population

READ 2018. Konganti K, Ehrlich A, Rusyn I, Threadgill DW. 2018. G3: Genes, Genomes, Genetics, 8(8), 2559-2562. DOI: 10.1534/g3.118.200230. PMID: 29880557. PMCID: PMC6071593

Determination of Thyreostats in Urine Using Supported Liquid Extraction and Mixed-Mode Cation-Exchange Solid-Phase Extraction: Screening and Confirmatory Methods

READ 2018. Tölgyesi Á, Giri A. Barta E, McDonald TJ and Sharma VK. 2018. Journal of Chromatographic Science. DOI: 10.1093/chromsci/bmy054. PMID: 29878072

The MPLEx Protocol for Multi-omic Analyses of Soil Samples

READ 2018. Nicora CD, Burnum-Johnson KE, Nakayasu ES, Casey CP, White III RA, Chowdhury, TR, Kyle, JE, Kim, Y-M, Smith, RD, Metz, TO, Jansson, JK, Baker, ES. 2018Journal of Visualized Experiments: JoVE 135. doi: 10.3791/57343. PMID: 29912205    

Incorporation of the Glutathione Conjugation Pathway in an Updated Physiologically-based Pharmacokinetic Model for Perchloroethylene in Mice

READ 2018. Dalaijamts C, Cichocki, JA, Luo, YS, Rusyn, I, & Chiu, WA. 2018. Toxicology and Applied Pharmacology. doi: 10.1016/j.taap.2018.05.033. PMID: 29857080. PMCID: PMC6051410

Conditional Toxicity Value (CTV) Predictor: An In Silico Approach for Generating Quantitative Risk Estimates for Chemicals

READ 2018. Wignall, JA, Muratov, E, Sedykh, A, Guyton, KZ, Tropsha, A, Rusyn, I, & Chiu, WA. 2018. Environmental health perspectives, 126(5), 057008-057008. doi: 10.1289/EHP2998. PMID: 29847084. PMCID: PMC6071978

A Comparison of Vacancy Dynamics Between Growing and Shrinking Cities Using the Land Transformation Model

READ 2018.  Lee J, Newman G, and Park Y. 2018. Sustainability, 10(5), 1513. doi: 10.3390/su10051513

Big Data Approach to Batch Process Monitoring: Simultaneous Fault Detection and Diagnosis Using Nonlinear Support Vector Machine-based Feature Selection

READ 2018. Onel M, Kieslich CA, Guzman YA, Floudas CA, & Pistikopoulos EN. 2018. Computers & Chemical Engineering, 115, 46-63

ToxPi Graphical User Interface 2.0: Dynamic Exploration, Visualization and Sharing of Integrated Data Models

READ 2018. Marvel S, To K, Grimm FA, Wright FA, Rusyn I, and Reif DM. 2018. BMC Bioinformatics 19:80. doi: 10.1186/s12859-018-2089-2. PMID:29506467. PMCID: PMC5838926

Utilizing Ion Mobility Spectrometry and Mass Spectrometry for the Analysis of Polycyclic Aromatic hydrocarbons, Polychlorinated Biphenyls, Polybrominated Diphenyl Ethers and their Metabolites

READ 2018. Zheng, X, Dupuis, KT, Aly, NA, Zhou, Y, Smith, FB, Tang, K, … and Baker, ES. 2018. Analytica Chimica Acta.  doi: 10.1016/j.aca.2018.02.054. PMID: 30292301

Optimal Design of Energy Systems Using Constrained Grey-box Multi-objective Optimization

READ 2018. Beykal, B, Boukouvala, F, Floudas, CA, & Pistikopoulos, EN. 2018. Computers & Chemical Engineering. https://doi.org/10.1016/j.compchemeng.2018.02.017

Application of the Key Characteristics of Carcinogens in Cancer Hazard Identification

READ 2018. Guyton KZ, Rusyn I, Chiu WA, Corpet DE, van den Berg M, Ross MK, Christiani DC, Beland FA, and Smith MT. 2018. Carcinogenesis. 39(4):614-622. doi: 10.1093/carcin/bgy03. PMID: 29562322. PMCID: PMC5888955

Introduction to Mammalian Genome Special Issue: The Combined Role of Genetics and Environment Relevant to Human Disease Outcomes

READ 2018. Rusyn I, Kleeberger SR, McAllister KA, French JE, and Svenson KL. 2018. Mamm Genome 29:1-4. doi: 10.1007/s00335-018-9740-0. PMID:29460122. PMCID: PMC5849569 

Comparing Residential Contamination in a Houston Environmental Justice Neighborhood Before and After Hurricane Harvey

READ 2018. Horney JA, Casillas GA, Baker ES, Stone KW, Kirsch KR, Camargo K, Wade TL, and McDonald TJ. 2018. PLoS One 13(2):e0192660. doi: 10.1371/journal.pone.0192660. PMID:29420658. PMCID: PMC5805347

The Development of a Participatory Assessment Technique for Infrastructure: Neighborhood-level Monitoring Towards Sustainable Infrastructure Systems.

READ 2018. Hendricks MD, Meyer MA, Gharaibeh NG, Van Zandt S, Masterson J, Cooper Jr JT, Horney, JA and Berke P. 2018Sustainable Cities and Society, 38, 265-274.    

Use of High-throughput in Vitro Toxicity Screening Data in Cancer Hazard Evaluations by IARC Monograph Working Groups

READ 2018. Chiu WA, Guyton KZ, Martin MT, Reif DM, and Rusyn I. 2018. ALTEX35(1), 51. doi: 10.14573/altex.1703231. PMID: 28738424. PMCID: PMC5783793

Population-based Dose-response Analysis of Liver Transcriptional Response to Trichloroethylene in Mouse

READ 2018. Venkatratnam A, House JS, Konganti K, McKenney C, Threadgill DW, Chiu WA, Aylor DL, Wright FA, and Rusyn I. 2018Mamm Genome 29:168-181. doi: 10.1007/s00335-018-9734-y. PMID:29353386. PMCID: PMC6094947

Spatio-temporal Asymmetry of Local Wind Fields and its Impact on Short-term Wind Forecasting

READ 2018. Ezzat, AA, Jun, M, and Ding, Y. 2018. IEEE Transactions on Sustainable Energy. doi: 10.1109/TSTE.2018.2789685

Advancing Chemical Risk Assessment Decision-making with Population Variability Data: Challenges and Opportunities

READ 2018. Chiu WA, Rusyn I. 2018. Mammalian Genome, 29(1-2), 182-189. doi: 10.1007/s00335-017-9731-6. PMID: 29299621. PMCID: PMC5849521

The Influence of Urban Landscape Spatial Patterns on Single-Family Property Values

READ 2018. Kim JH, Li W, Newman G, Kil SH, and Park SY. 2018Environment and Planning. B: Urban Analytics and City Science, 45 (1): 26-43.

Biological Limitations of Dechlorination of Cis-dichloroethene During Transport in Porous Media

READ 2017. Mendoza-Sanchez, I, Autenrieth, RL, McDonald, TJ, and Cunningham, JA. 2017. Environmental Science & Technology. 52(2):684-691. doi: 10.1021/acs.est.7b04426. PMID: 29236483

Occurrence, Distribution and Composition of Aliphatic and Polycyclic Aromatic Hydrocarbons in Sediment Cores from the Lower Fox River, Wisconsin, US

READ 2017. Brewster CS, Sharma VK, Cizmas LH, and McDonald TJ. 2017. US. Environmental Science and Pollution Research, 25(5), 4974-4988. doi: 10.1007/s11356-017-0819-z. PMID: 29204943

Sustainable Urbanism for a Metropolitan Corridor: An Evidence-based Urban Design for Park 10 in Houston, Texas

READ 2017. Kim JH, Newman G, Feng H, Merrill J, and Park J. 2017. Landscape Architecture Frontiers, 5(5), 96-109

Climate Model Intercomparison

READ 2017. Jun, M. 2017. CHANCE, 30(4), 19-25.

Spherical Process Models for Global Spatial Statistics

READ 2017. Jeong J, Jun M, & Genton MG. 2017. Statistical Science, 32(4), 501-513.  doi:10.1214/17-STS620

A Customizable Flow Injection System for Automated, High Throughput, and Time Sensitive Ion Mobility Spectrometry and Mass Spectrometry Measurements

READ 2017. Orton, DJ, Tfaily, MM, Moore, RJ, LaMarche, BL, Zheng, X, Fillmore, TL., … and Smith, RD. 2017Analytical Chemistry90(1), 737-744. 90(1):737-744. doi: 10.1021/acs.analchem.7b02986. PMID: 29161511. PMCID: PMC5764703

A Pipeline for High-throughput Concentration Response Modeling of Gene Expression for Toxicogenomics

READ 2017. House JS, Grimm FA, Jima DD, Zhou Y, Rusyn I, Wright FA. 2017.  Frontiers in Genetics, 8, 168. doi: 10.3389/fgene.2017.00168. PMID:29163636. PMCID: PMC5672545

APROBA-Plus: A Probabilistic Tool to Evaluate and Express Uncertainty in Hazard Characterization and Exposure Assessment of Substances

READ 2017. Bokkers BGH, Mengelers MJ, Bakker MI, Chiu WA, and Slob W. 2017. Food and Chemical Toxicology, 110, 408-417. doi: 10.1016/j.fct.2017.10.038.PMID: 29074418. PMCID: PMC5793872

A Structural Examination and Collision Cross Section Database for Over 500 Metabolites and Xenobiotics Using Drift Tube Ion Mobility Spectrometry

READ 2017. Zheng, X, Aly, NA, Zhou, Y, Dupuis, KT, Bilbao, A, Paurus, VL, … and Baker, ES. 2017.Chemical Science8(11), 7724-7736. doi: 10.1039/c7sc03464d. PMID: 29568436. PMCID: PMC5853271

An Empirical Bayes Approach for Multiple Tissue eQTL Analysis

READ  2017. Li G, Shabalin AA, Rusyn I, Wright FA, and Nobel AB. 2017. Biostatistics, 19(3), 391-406. doi: 10.1093/biostatistics/kxx048. PMID: 29029013

Hurricane Recovery and Ecological Resilience: Measuring the Impacts of Wetland Alteration Post Hurricane Ike on the Upper TX Coast

READ  2017. Reja MY, Brody SD, Highfield WE, and Newman GD. 2017. Environmental Management. 60(6):1116-1126. doi: 10.1007/s00267-017-0943-z. PMID: 28939984. PMCID: PMC6042518

The Impact of Novel Assessment Methodologies in Toxicology on Green Chemistry and Chemical Alternatives

READ 2017. Rusyn I and Greene N. 2017. Toxicological Sciences 161:276-284. doi: 10.1093/toxsci/kfx196. PMID:29378069. PMCID: PMC5837797

Assessment of Toxicity of Selenium and Cadmium Selenium Quantum Dots: A Review

READ 2017. Sharma, VK, McDonald, TJ, Sohn, M, Anquandah, GA, Pettine, M, and Zboril, R. 2017. Chemosphere,188, 403-413. 

Effect of Land Cover Changes on the Sediment and Water Quality Characteristics of Brays Bayou Watershed

READ 2017.  Bhandari S, Sridhar BM, and Wilson BL. 2017. Water, Air, & Soil Pollution, 228(9), 336.

Editor’s Highlight: Comparative Dose-response Analysis of Liver and Kidney Transcriptomic Effects of Trichloroethylene and Tetrachloroethylene in B6C3F1 Mouse

READ 2017. Zhou Y, Cichocki JA, Soldatow VY, Scholl EH, Gallins P, Jima DD, Yoo HS, Chiu WA, Wright FA, and Rusyn I. 2017. Toxicological Sciences, 160(1), 95-110. doi: 10.1093/toxsci/kfx165. PMID:28973375. PMCID: PMC5837274

Development of High Capacity Enterosorbents for Aflatoxin B1 and Other Hazardous Chemicals

READ  2017. Wang, M, Maki, CR, Deng, Y, Tian, Y,  and Phillips, TD. 2017.  Chemical Research in Toxicology, 30(9), 1694-1701. doi: 10.1021/acs.chemrestox.7b00154. PMID: 28768106

High-Content Assay Multiplexing for Vascular Toxicity Screening in Induced Pluripotent Stem Cell-Derived Endothelial Cells and Human Umbilical Vein Endothelial Cells

READ 2017. Iwata Y, Klaren WD, Lebakken CS, Grimm FA, and Rusyn I. 2017. Assay and Drug Development Technologies, 15(6), 267-279. doi: 10.1089/adt.2017.786. PMID: 28771372. PMCID: PMC5576216

Characterizing Properties of Non-estrogenic Substituted Bisphenol Analogs Using High Throughput Microscopy and Image Analysis

READ 2017. Szafran, AT, Stossi, F, Mancini, MG, Walker, CL, & Mancini, MA. 2017. PloS one12(7), e0180141. doi: 10.1371/journal.pone.0180141. PMID: 28704378. PMCID: PMC5509144

Impacts of Heronries on Water Quality as Evaluated through Escherichia coli and Fecal Sterol Analyses

READ 2017. Telesford-Checkley JM, Mora MA, Gentry TJ, McDonald TJ and Boellstorff DE. 2017. Water Environment Research, 89(6), 508-518. doi: 10.2175/106143017X14902968254430. PMID: 28545602

Characterization of Variability in Toxicokinetics and Toxicodynamics of Tetrachloroethylene Using the Collaborative Cross Mouse Population

READ 2017. Cichocki JA, Furuya S, Venkatratnam A, McDonald TJ, Knap AH, Wade T, Sweet S, Chiu WA, Threadgill DW, and Rusyn I. 2017. Environmental Health Perspectives. 125(5):057006. doi: 10.1289/EHP788. PMID: 28572074. PMCID: PMC5726344

Grouping of Petroleum Substances as Example UVCBs by Ion Mobility-Mass Spectrometry to Enable Chemical Composition-Based Read-Across

READ 2017. Grimm FA, Russell WK, Luo YS, Iwata Y, Chiu WA, Roy T, Boogaard PJ, Ketelslegers HB, and Rusyn I. 2017. Environmental Science & Technology. 51(12):7197-7207. doi: 10.1021/acs.est.6b06413. PMID: 28502166. PMCID: PMC5627358

Editor’s Highlight: Collaborative Cross Mouse Population Enables Refinements to Characterization of the Variability in Toxicokinetics of Trichloroethylene and Provides Genetic Evidence for the Role of PPAR Pathway in Its Oxidative Metabolism

READ 2017. Venkatratnam A, Furuya S, Kosyk O, Gold A, Bodnar W, Konganti K, Threadgill DW, Gillespie KM, Aylor DL, Wright FA, Chiu WA, and Rusyn I. 2017. Toxicological Sciences. 158(1):48-62. doi: 10.1093/toxsci/kfx065. PMID: 28369613. PMCID: PMC6075464 

In Vitro Cardiotoxicity Assessment of Environmental Chemicals Using an Organotypic Human Induced Pluripotent Stem Cell Derived Model

READ  2017. Sirenko O, Grimm FA, Ryan KR, Iwata Y, Chiu WA, Parham F, Wignall JA, Anson B, Cromwell EF, Behl M, Rusyn I, and Tice RR. 2017. Toxicology and Applied Pharmacology. 322:60-74. doi: 10.1016/j.taap.2017.02.020. PMID: 28259702

Estimating the Contribution of Nitrogen and Phosphorus to Waterbodies by Colonial Nesting Waterbirds

READ 2017. Telesford-Checkley JM, Mora MA, Grant WE, Boellstorff DE, & Provin TL. 2017. Science of the Total Environment, 574, 1335-1344.

Repurposing Vacant Land Through Landscape Connectivity

READ 2017. Newman GD, Smith AL and Brody SD. 2017. Landscape Journal, 36(1), 37-57. PMID: 30034076. PMCID: PMC6053283